FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006072011

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006072011
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7359338
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA19650.012.1467911
CGAGTAA2201.0524154E-511.25871
GAAACGG21950.011.0708966
ACGGGAT12650.011.0269749
AAACGGG21550.010.9626337
AACGGGA17600.010.8657938
CGAAACG1700.001839089910.5885045
CGGGATT11000.010.43109110
GGAAACG22150.010.1582725
CCGGCTA6650.010.14959938
CGGCTAA6900.09.7818639
ACGCCCG3053.7672326E-69.5894334
CGAGCTT2250.001812359.006961
CGTATGC2801.5012479E-48.8394545
CGCGCCT2300.00222913558.804152533
CCCGGAA2952.6203546E-48.3963181
CCCCGTT4051.73628E-68.3397781
GCCACCG13850.08.28523928
CCCCGAC2750.00121310838.1881461
ACCGCGC4752.4149995E-78.05261731
Produced by FastQC (version 0.11.5)