FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006072039

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006072039
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12116463
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA33050.015.6931431
AACGGGA30950.013.8834738
AAACGGG37400.013.7146627
ACGGGAT23400.013.4597679
GAAACGG38800.012.8728686
GGAAACG38550.012.6645935
CGGGATT21600.011.66513310
AACGGGT7700.09.9337598
CGGGAAT13650.09.72399610
GTTCGAC2109.7171887E-49.64353829
CGCGCCC7250.09.62200533
CGCCCGG13050.09.3101235
CGGGATA6301.8189894E-128.92739710
CGTACGT2050.00862334958.78168934
ACGGGTT7450.08.75723659
ACCGCGC8550.08.68482531
CCGTACG2350.00270553568.61819933
GTTGGAA68750.08.6069572
GCCACCG27250.08.42264828
GCTAGAC24500.08.17404729
Produced by FastQC (version 0.11.5)