FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006072041

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006072041
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8711319
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCGAA900.00374870215.00472451
CGTTGGA26050.012.5279361
AAACGGG25350.012.2485097
AACGGGA21950.012.0961488
ACGGGAT16300.011.7331869
CGGGATT15200.011.39821210
CACCGCG6150.011.34080230
GAAACGG27550.011.0252716
GGAAACG28400.010.4583975
ACCGCGC6250.010.43933131
CCCCGAA3806.4428605E-910.068961
CGCCCGG9250.09.48647835
CCCCGAT2851.7529692E-59.4766671
CCCGATT3003.2110114E-59.0028862
CCCGGAT3502.20141E-69.0028341
GCGTGAG21750.08.99968122
CGCGCCC4752.8030627E-98.999475533
CCGCGCC6500.08.999475532
CCCAAAG103750.08.981141
CGGGAAT10150.08.86713910
Produced by FastQC (version 0.11.5)