FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006072044

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006072044
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12722412
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA35700.013.0504491
ACGGGAT22450.012.528069
GAAACGG38150.011.3819626
AACGGGA32050.011.2331778
AAACGGG39100.011.1629157
GGAAACG40350.010.7626945
CGGGATA4405.456968E-1210.73882610
CGGGATT23250.010.645349510
CGCCCGG11350.010.30826835
ACGCCCG5900.010.29642834
CTCGTAT4458.62201E-109.60630643
CCGGCTA13850.09.422770538
CGTATGC5352.910383E-119.25177245
CCCGAAA5751.2732926E-119.0029191
TCTCGTA5302.3646862E-108.91539142
CCGCGCC9650.08.86050332
CGGCTAA14450.08.72008239
CGCGCCC7250.08.69001333
ACCGCGC9300.08.46882331
CCCGGAA6309.640644E-118.2169491
Produced by FastQC (version 0.11.5)