EGAF00006072047 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00006072047
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8334969
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGCC	291208	3.4938102349270883	TruSeq Adapter, Index 1 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	31000	44.23981	1
ATCGGAA	31185	43.97979	2
TCGGAAG	31295	43.897106	3
ACACGTC	31100	43.65801	13
CGGAAGA	31490	43.646713	4
CGTCTGA	31005	43.62619	16
CTCGTAT	30835	43.52064	42
TCTCGTA	30855	43.507797	41
ACGTCTG	31185	43.42488	15
CGTATGC	30955	43.39684	44
TCGTATG	30985	43.38256	43
TCACGAT	30930	43.323326	35
CACGTCT	31350	43.239388	14
ATCTCGT	31050	43.198334	40
GCACACG	31610	43.15291	11
GTATGCC	31195	43.048794	45
CATCACG	31175	43.03492	33
ACGATCT	31195	42.939842	37
CACACGT	31760	42.927853	12
CACGATC	31205	42.86892	36