FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006072066

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006072066
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8053491
Sequences flagged as poor quality0
Sequence length36
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA19850.011.8143181
ACGGGAT12900.011.6256769
AACGGGA17600.010.7365778
CACCGCG5750.010.70762730
GAAACGG22200.010.4717446
ACAGGCG20450.010.4136518
CGGGATT12900.010.23059510
AAACGGG21950.010.1802797
GCGTGAG14300.09.96312322
GCCACCG14150.09.96275228
GGAAACG22150.09.8901495
GAGCCAC40900.09.53362326
CGTGAGC14700.09.48797623
CCCGTAG1654.1940215E-49.1108871
AGGCGCC6150.09.02265920
CCCAAAG68150.08.8013961
CGGGATA2752.452416E-78.72559810
TACAGGC52850.08.71166817
CGATAAT3357.388735E-98.5261571
CCCAAGT29300.08.5169691
Produced by FastQC (version 0.11.5)