FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006072067

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006072067
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6293240
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA17800.015.0470231
AAACGGG19300.012.3578957
AACGGGA16250.012.3224788
ACGGGAT12850.011.9060369
GGAAACG21050.011.4376815
GAAACGG20950.011.38466
CGCCCGG6350.011.33848235
CCACGAT4001.0913936E-1111.2536561
CGGGATT11850.010.82225910
GCGCCCG4850.010.67000934
TATGCCG2605.9036684E-610.38543145
CACCGCG5950.010.20958930
ACCGCGC5300.010.18818531
CGAGATA2251.6402458E-410.003251
CGGGAAT7000.09.96380110
ACCACGC11300.09.55705831
CCCGATA1900.0046108759.4767631
TGCGCCC3155.674736E-69.28548533
CCCGAGT16500.09.2757411
CCCGTAG2200.00148284889.2075371
Produced by FastQC (version 0.11.5)