FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006072071

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006072071
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14038836
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC14750.029.89734645
TCTCGTA15750.027.4276942
CTCGTAT15450.027.37776243
TATCTCG16050.026.63788640
GTCACGA16350.026.0128828
TCGTATG17200.025.37790744
ATCGGAA18150.023.8170951
ATCTCGT18050.023.56098441
ACACGTC19150.022.67341412
TCGGAAG19150.022.4455722
AGTCACG19400.022.15521827
ACGAGTG19900.021.5999431
CGTCTGA20350.021.55605115
CACGAGT20050.021.43826930
CGGAAGA21050.020.7354553
ACGTCTG21750.019.85952414
CACGTCT23200.018.61830113
GCACACG25050.017.69278310
CACACGT28650.015.7837111
TCACGAG29000.015.05456629
Produced by FastQC (version 0.11.5)