FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006072081

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006072081
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6855638
Sequences flagged as poor quality0
Sequence length36
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATAGGCG2800.011.769381518
ACAGGCG18200.011.27556218
CGTTGGA16700.011.1843431
AACGGGA14450.011.0915518
GCGTGAG11850.010.9988422
AAACGGG18500.010.6065937
CGTGAGC12500.010.54705923
CCCAAGT24250.010.3337951
GAAACGG18450.010.3105946
GGAAACG18450.010.2294085
CCCAAAG54400.010.1000031
ACGGGAT10950.09.9858519
CCGAGTA9100.09.876622
CCCGAGT11550.09.8375421
TAGGCGT3203.45608E-119.83032419
CCCTAAA16400.09.7755021
GCTAGAC9950.09.64176329
GATCGGA2103.5442536E-69.6354011
TACAGGC44700.09.58394617
AGGCGTG17200.09.57993920
Produced by FastQC (version 0.11.5)