FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006072083

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006072083
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7752037
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA23650.014.7893581
CACCGCG6500.014.19114930
AACGGGA19750.013.4413338
ACCGCGC6200.013.42632231
ACGGGAT14400.012.9671059
GCGTGAG18200.012.85559522
AAACGGG25500.012.7042697
CGGGATT13200.012.44160410
GAAACGG26000.012.3767036
CGTGAGC18800.012.20613523
CGCGCCC5600.012.0528233
GGAAACG28250.011.8690435
CCGCGCC6950.011.33022932
GCCACCG16850.011.215728
CGCCCGG8850.011.18567135
TATGCCG3401.2345481E-810.5901033
CGGGAAT9400.010.5305810
AGGCGTG23150.010.49542820
ACAGGCG25600.010.45765718
GAGCCAC56050.010.31570626
Produced by FastQC (version 0.11.5)