FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006072084

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006072084
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8667539
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGACGA250.002109303435.99500731
TATCTCG5400.017.08106241
CTCGTAT5550.015.80870944
TCTCGTA5900.014.87090543
AAACGGG27700.012.9144887
CGTTGGA27950.012.9006831
ACGGGAT16800.012.4540619
AACGGGA22900.012.2798158
ATCTCGT7900.012.24520842
GAAACGG29400.011.9446316
TCGTATG7350.011.9376745
CGGGATT15650.011.644155510
GATCGGA7500.011.41817951
GGAAACG30400.010.9591935
AACGGGT6050.010.7835048
GCGTGAG23900.010.3544522
CGTGAGC23150.010.30231423
ATCGGAA9200.010.0329022
CGGGATA3603.0140654E-89.9989610
ACACGTC9450.09.99890113
Produced by FastQC (version 0.11.5)