FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006072092

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006072092
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7009359
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA21900.011.6429881
ACGGGAT13800.011.2489629
AACGGGA18750.010.9180578
AAACGGG23100.010.7120747
CGGGATT12900.010.29026110
GGAAACG24100.010.2674445
GAAACGG24600.010.2416426
CGCCCGG7100.09.5056935
ACAGGCG21550.09.08184618
GCGTGAG15350.08.941627522
CCCGAAT7650.08.8489141
AACGGGT5352.8558134E-108.8302058
CCACGAA4152.5662848E-78.6996561
CGTGAGC16700.08.35353623
GATTTCG10950.08.01192955
CGCGCCC3401.3917086E-47.941463533
CCCAAAG75800.07.82918831
GCGCCCG5251.4479338E-77.714179534
GTCGTTT2650.0079870737.64145852
CCCCGGT3552.22022E-47.6275151
Produced by FastQC (version 0.11.5)