FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006072098

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006072098
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9108522
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA24950.014.1861781
AACGGGA22600.013.238958
AAACGGG27700.013.2378727
GAAACGG28000.012.8591716
ACGGGAT16850.012.8168619
GGAAACG28950.011.9006485
CGGGAAT7750.011.61097310
CGGGATT16250.010.93664510
ACGGGAA9450.09.76028259
AACGGGT6600.09.2030158
GCGTGAG21600.08.95684522
CGGGATA4304.874164E-88.89387110
ACCGCGC5659.094947E-118.75960631
CGCCCGG9000.08.74854735
CGTGAGC22000.08.58948123
CCCAAAG99100.08.348891
CCCTATT21800.08.0663011
CCCGAAA4202.8704271E-68.0515281
CGCGCCC4509.202722E-77.998670633
CCGCGCC6206.0754246E-107.98254532
Produced by FastQC (version 0.11.5)