FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006072123

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006072123
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7808503
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA26600.012.8230081
ACGGGAT14650.012.7396089
ACCGCGC5400.012.4936831
AAACGGG26400.012.2651857
AACGGGA21750.012.1993968
CGCGCCC4250.012.17039133
CACCGCG6100.011.79738630
CGCCCGG7100.011.71987335
CGGGATT14000.011.56454110
GAAACGG28150.011.5027716
GGAAACG28600.011.0562825
CCGCGCC6250.010.79467732
CCCCGAA3154.3204636E-810.7566071
CGGGAAT10200.010.58193310
CGTATGC3206.34529E-79.86410445
CCCGAAC1850.00359079969.7681621
ACGCCCG3552.6426824E-79.50260134
CCCATAA24400.08.8874251
GATTTCG10250.08.8142075
AAGCGGC5504.5474735E-108.6236793
Produced by FastQC (version 0.11.5)