FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006072137

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006072137
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4642233
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCGTAC550.003883102420.5044651
CTCGTAT2350.018.18599544
CGTTTCG2251.8189894E-1216.99394833
TCTCGTA2600.015.5720543
ACGGGAT8850.015.2486449
AACGGGA13200.015.1648938
TCGTATG2950.014.51168845
CGTTGGA15650.014.4120851
AAACGGG16350.014.0315497
GAAACGG17150.013.6393126
GGAAACG17800.012.795115
CGGGAAT5750.012.51714810
ACGCCCG2003.6791716E-612.37192834
CGGGATT9750.012.22628510
CGCCCGG4500.011.99702135
TCGGAAT3254.9112714E-1011.76643737
CCGGCTA4350.011.37660838
ATCTCGT3602.237357E-1011.24635942
CGGGATA1400.005274630611.24587410
GTTTCGG3451.3224053E-911.08420434
Produced by FastQC (version 0.11.5)