FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006072155

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006072155
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11088549
Sequences flagged as poor quality0
Sequence length36
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA4500.011.6728391
CGTTGGA22300.011.2391271
ACGGGAT14550.011.2363179
AACGGGA18300.011.146758
ACAGGCG27100.011.06942618
CGTGAGC19400.010.74680523
AGTCACG5350.010.65383328
GCGTGAG19450.010.56494622
CGGGATT13300.010.48797810
CCCTAAA27900.010.274251
AAACGGG23950.010.1454187
GTCACGT5550.09.99965129
GGAAACG24750.09.8197445
GAGCCAC55150.09.76389426
CCCAAGT36150.09.7561971
CCCTAAC13650.09.4555491
GAAACGG26500.09.45256
CCCAAAG90750.09.3933971
ACACGTC6250.09.35933613
CACCGCG9800.09.3364130
Produced by FastQC (version 0.11.5)