FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006072182

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006072182
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7820711
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTT1150.001169875413.7462031
ACGGGAT16150.012.6725859
AACGGGA21600.012.2863978
CGGGATT15200.011.83702910
CGTTGGA25250.011.8057911
AAACGGG25000.011.6949847
GAAACGG26200.011.1594796
CACCGCG4900.011.01681130
ACCGCGC4500.010.99809731
CCGCGCC4950.010.90734432
GGAAACG26700.010.8108545
CCCCGTA2107.8865814E-510.7538321
CGCGCCC3805.7480065E-1010.65618833
CGCCCGG7450.09.96484735
CGGGAAT8100.09.16273810
ACCACGC13450.08.86463731
CCACGAT4253.645E-78.5018531
ACAGGCG24150.08.10211618
CTCGTAT3401.3981597E-47.938330744
CACCACG16450.07.930541530
Produced by FastQC (version 0.11.5)