FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006072186

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006072186
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6404781
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGGGAT11300.012.14045059
CGTTGGA18850.012.0899111
AAACGGG19600.011.5890747
AACGGGT5100.011.465338
GAAACGG20850.011.2205066
CGGGATT11900.010.9613610
CGAAACG1700.00179770510.6174495
CGCCCGG7200.010.309463535
ACGCCCG4152.4374458E-1010.29817134
AACGGGA15900.010.0425648
CCCGTAA3155.060774E-710.0283761
GGAAACG21550.09.946165
CCCGAAT7150.09.7829271
CCCCGAA2801.3795014E-59.6702191
CCTCGTT3053.6297915E-69.6173771
CCGGCTA8100.09.16303738
GATTTCG7700.09.0834345
GTCGTTT2504.6092647E-49.0251852
ACCACGC14350.08.9346531
GCCACCG16200.08.74687828
Produced by FastQC (version 0.11.5)