FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006072190

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006072190
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12433879
Sequences flagged as poor quality0
Sequence length36
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTGAG20950.011.813210522
CGTTGGA28050.011.6628051
CGTGAGC22150.011.17326323
ACAGGCG31600.011.01215718
AAACGGG31950.010.7505557
AACGGGA24950.010.70078858
ACGGGAT19350.010.697069
GGAAACG30700.010.5062685
ATAGGCG4150.010.48145218
CCCAAAG101050.010.469651
GAGCCAC58900.010.44095226
GAAACGG32800.010.3351046
GCCACCG20350.010.31898328
CGGGATT18000.09.58278310
GGGATTA92700.09.49783612
CCCAAGT44750.09.4230761
GGATTAC86500.09.34628313
GGCGTGA27050.09.26020721
CCCTACG1300.00570643279.2347691
CACCGCG8450.09.23038830
Produced by FastQC (version 0.11.5)