FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006072194

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006072194
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7449641
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA19150.015.9372871
ACGGGAT13250.014.091439
AAACGGG22750.013.8433897
AACGGGA18600.013.4246478
GAAACGG23100.013.152646
CGGGATT13250.013.07277310
GGAAACG23750.012.5084745
CGCCCGG8450.011.44764835
GCGTGAG18150.011.27866422
TAGGCGT2751.0017466E-610.63452419
ATAGGCG3002.6996167E-710.49818518
CGTGAGC18500.010.457323
ACAGGCG24800.010.43166418
ACGCCCG4355.711627E-109.82661234
AGGCGTG23850.09.52665520
CGGGAAT7350.09.48783710
CAGGCGT22750.09.29509619
AACGGGT4407.239578E-99.2026458
GGCGTGA24350.09.05387721
ACCGCGC7050.08.935945531
Produced by FastQC (version 0.11.5)