FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006072197

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006072197
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9388292
Sequences flagged as poor quality0
Sequence length36
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGGGAT13850.012.0208949
CGGGATT12600.011.90400310
CGTTGGA21150.011.5636121
CACCGCG6950.011.22314430
AACGGGA18800.011.1693818
AAACGGG22600.010.7512987
GCCACCG16150.010.1241128
GATCGGA2105.241491E-710.0028781
GAAACGG24150.09.9991496
GGAAACG23100.09.9357555
CGTGAGC16550.09.87973423
ACAGGCG23450.09.65802718
GCGTGAG16200.09.53749622
CCCCGAA3655.456968E-129.4547751
CCCAAAG77300.09.3364521
CCCGGAA2957.912604E-99.1551771
GAGCCAC48750.09.077455526
GTCGGGA3358.1490725E-108.9544627
CCACCGC12700.08.85845829
CCCCGTT3401.0695658E-98.826071
Produced by FastQC (version 0.11.5)