Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00006072237 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7998120 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACGGGAT | 1800 | 0.0 | 12.995197 | 9 |
AACGGGA | 2190 | 0.0 | 12.735021 | 8 |
CGTTGGA | 2645 | 0.0 | 12.285091 | 1 |
CGGGATT | 1825 | 0.0 | 12.077727 | 10 |
AAACGGG | 2700 | 0.0 | 11.74566 | 7 |
GAAACGG | 2815 | 0.0 | 11.10602 | 6 |
CGTGAGC | 2220 | 0.0 | 10.942108 | 23 |
ACCGCGC | 620 | 0.0 | 10.883823 | 31 |
GGAAACG | 2895 | 0.0 | 10.828091 | 5 |
CGTATGC | 440 | 5.456968E-12 | 10.734736 | 44 |
GCGTGAG | 2150 | 0.0 | 10.670675 | 22 |
CGCGCCT | 245 | 3.501252E-5 | 10.098561 | 33 |
CACCGCG | 685 | 0.0 | 9.851051 | 30 |
CCGCGCC | 710 | 0.0 | 9.820437 | 32 |
CTCGTAT | 460 | 1.5279511E-10 | 9.779056 | 42 |
CCGGATC | 190 | 0.0045331903 | 9.496365 | 2 |
CGCGCCC | 525 | 2.0008883E-11 | 9.425324 | 33 |
ACAGGCG | 2905 | 0.0 | 9.291003 | 18 |
TCTCGTA | 470 | 2.3283064E-9 | 9.092442 | 41 |
AGGCGTG | 2710 | 0.0 | 8.963589 | 20 |