FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006072241

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006072241
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10656770
Sequences flagged as poor quality0
Sequence length36
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA2950.016.9455241
ATCGGAA4350.012.0646812
ACGGGAT17300.011.6138289
CGGGATT15100.011.22060110
CGTTGGA28000.011.1989021
AACGGGA23000.010.9521188
CCCGGAT2503.8380676E-1010.9067551
AAACGGG29050.010.8906297
AGTCACG5100.010.87869428
CGTCTGA4850.010.8203416
GTCACGT4800.010.62122729
TCGGAAG5000.010.4963213
CACCGCG6450.010.46120530
GCCACCG15200.010.45700828
CCCAAGT33300.010.371791
GAAACGG29650.010.2658326
GCGTGAG16300.010.2126322
ACACGTC4850.010.20203513
ACAGGCG22700.010.039968518
GGAAACG29350.09.8091695
Produced by FastQC (version 0.11.5)