FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006072245

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006072245
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9231052
Sequences flagged as poor quality0
Sequence length36
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGGCGC1156.964656E-714.34679219
CCCCGAT2307.2759576E-1212.3946421
CCCAACG2550.012.3562681
AACGGGA17250.012.1730378
ACGGGAT12950.011.8138849
CGTTGGA20750.011.2801461
AAACGGG22050.011.0874577
GCGTGAG18250.010.93208122
CACCGCG4700.010.85145930
ACAGGCG25050.010.83730818
CGGGATT12800.010.54617210
GAAACGG22200.010.4044876
CCCAAAG78700.010.3140861
CGTGAGC18950.010.29094623
GAGCCAC48900.010.21542726
GGAAACG22400.09.8443745
CCCCAAT12500.09.6025851
CCTCGAT2054.162095E-69.5147561
CGGGAAT6950.09.27995710
CAGGCGT23550.09.23500319
Produced by FastQC (version 0.11.5)