FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006072246

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006072246
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12450145
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG4450.014.15597345
CGTTGGA36500.012.9638781
AAACGGG36700.012.62890157
AACGGGA31050.012.4640498
GAAACGG37900.011.8728566
ACGGGAT23700.011.7724189
CGTCGCT1400.00520487811.2662271
CGATGTA6200.011.24975833
GGAAACG41200.011.0861045
CTCGTAT6150.010.97541741
CGGGATA5850.010.76947410
CGTATGC6700.010.74543343
TCTCGTA6000.010.49981640
TCGTATG7750.010.160542
ACCGATG6450.010.11569531
GCCACCG26400.09.97097528
CCGATGT6950.09.71170832
ACCGCGC9500.09.70996631
CGGGATT22050.09.69409710
CGGGAAT12600.09.64307510
Produced by FastQC (version 0.11.5)