FastQCFastQC Report
Thu 12 May 2022
EGAF00006075717

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006075717
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49536239
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGC603520.12183403750131293No Hit
CCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAG601040.12133339392197295No Hit
ACGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCT531610.10731739242456416No Hit
GTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGG511920.10334252465149807No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)