FastQCFastQC Report
Thu 12 May 2022
EGAF00006075917

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006075917
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65256662
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACCAACTTCATCCACGTTCACCTTGCCCCACAGGGCAGTAACGGCAGAC3155800.48359813439430904No Hit
CTCACCACCAACTTCATCCACGTTCACCTTGCCCCACAGGGCAGTAACGG2150350.32952191149464555No Hit
ACCAACTTCATCCACGTTCACCTTGCCCCACAGGGCAGTAACGGCAGACT1244970.19078052138186288No Hit
CTTTAATAGAAATTGGACAGCAAGAAAGCGAGCTTAGTGATACTTGTGGG1110540.17018032580336395No Hit
CCACGTTCACCTTGCCCCACAGGGCAGTAACGGCAGACTTCTCCTCAGGA1026860.15735711397558153No Hit
GTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCC890120.13640293155049826No Hit
CAGCAAGAAAGCGAGCTTAGTGATACTTGTGGGCCAGGGCATTAGCCACA883460.13538234609670963No Hit
GTCCAGGTGAGCCAGGCCATCACTAAAGGCACCGAGCACTTTCTTGCCAT866330.13275732675385696No Hit
CCCAGGGCCTCACCACCAACTTCATCCACGTTCACCTTGCCCCACAGGGC866230.1327420026479442No Hit
CTTAGGGTTGCCCATAACAGCATCAGGAGTGGACAGATCCCCAAAGGACT825720.12653420734269244No Hit
GTCTTGGTGGTGGGGAAGGACAGGAACATCCTCTCCAGGGCCTCCGCACC764490.11715125729232058No Hit
GTTCACCTTGCCCCACAGGGCAGTAACGGCAGACTTCTCCTCAGGAGTCA735590.11272259068353818No Hit
GGCATGTCGTCCACGTGCGCCACGGCGTTGGTCAGCGCGTCGGCCACCTT731080.11203147350687351No Hit
CCAACTTCATCCACGTTCACCTTGCCCCACAGGGCAGTAACGGCAGACTT729840.11184145459355553No Hit
GTCACAGTGCAGCTCACTCAGTGTGGCAAAGGTGCCCTTGAGGTTGTCCA709000.10864791092134012No Hit
TCCACGTTCACCTTGCCCCACAGGGCAGTAACGGCAGACTTCTCCTCAGG674560.10337028884499179No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)