FastQCFastQC Report
Sun 15 May 2022
EGAF00006076017

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006076017
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40741578
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGC608630.1493879299422325No Hit
CCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAA527290.12942306751103258No Hit
ACGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCT492810.120959968708134No Hit
CCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAG482090.11832875005479661No Hit
GCCGTATCGTTCCGCCTGGGCGGGATTCTGACTTAGAGGCGTTCAGTCAT432790.10622808964345958No Hit
GCCCCATTGGCTCCTCAGCCAAGCACATACACCAAATGTCTGAACCTGCG416730.10228617065347836No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)