FastQCFastQC Report
Thu 12 May 2022
EGAF00006076098

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006076098
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44146314
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT1396730.3163865504150584No Hit
CACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC809710.18341508647811455No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG503450.11404123116598137No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)