FastQCFastQC Report
Sun 15 May 2022
EGAF00006076268

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006076268
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45893736
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAAGACCTGGGACAGAGGACTGCTGTCTGCCCTCTCTGGTCACCCTGCC2424400.5282638136062839No Hit
CTGGGACAGAGGACTGCTGTCTGCCCTCTCTGGTCACCCTGCCTAGCTAG597260.13013976460752727No Hit
CTCGGCTTTGACAGAGTGCAAGACGATGACTTGCAAAATGTCGCAGCTGG589160.12837481786185373No Hit
CTCCTCGGCTTTGACAGAGTGCAAGACGATGACTTGCAAAATGTCGCAGC571700.12457037709895746No Hit
GGCTCCTCGGCTTTGACAGAGTGCAAGACGATGACTTGCAAAATGTCGCA536460.11689176928197784No Hit
CCTGGGACAGAGGACTGCTGTCTGCCCTCTCTGGTCACCCTGCCTAGCTA518990.11308514957248197No Hit
CTGCTGTCTGCCCTCTCTGGTCACCCTGCCTAGCTAGAGGATCTGTGACC474140.10331257407328964No Hit
GAAGACCTGGGACAGAGGACTGCTGTCTGCCCTCTCTGGTCACCCTGCCT462660.10081114337695236No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)