FastQCFastQC Report
Wed 11 May 2022
EGAF00006076271

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006076271
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40800903
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCTCGTATG3277890.803386630928242TruSeq Adapter, Index 3 (97% over 35bp)
CTGGGATGTCCGCTGCAATCTGCTCCGGGGCTGCAGCAACCTCATCAGCT447150.10959316268073774No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)