FastQCFastQC Report
Sat 1 Apr 2023
EGAF00006127099

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006127099
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74927070
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG8322311.1107213988215474No Hit
CTCTCTTTGAGTACGG3022470.4033882547389081No Hit
TGTCTGCACTTATGGC1713160.22864366643457432No Hit
TACCGACCTAACGAAT1698040.22662570416806635No Hit
TGGACCTCTCGACTAT1646820.2197897235271578No Hit
TAACGCATGTGATGAA1596720.21310322157265726No Hit
TGTAGACACGAATTGA1529400.20411848481463377No Hit
CTAATCTACATGAATG1523630.2033484026534068No Hit
CGCTAGTCTAGCCTAT1509710.20149059612233605No Hit
CGCATTCTGACTAGTC1411040.18832179077601727No Hit
AACTTACCTTTGACAC1406420.1877051911945843No Hit
TGTACGATGCAATAGA1402110.1871299651781392No Hit
AGAACGCGAGTACGTT1401740.18708058382637943No Hit
GGTATTTCTTGGCTGC1265440.1688895615429777No Hit
CGTGTAATGTAACGGG1252710.1671905761162154No Hit
CTGCACGGAACACCGC1224990.1634909786276175No Hit
AGTTTCTTGATGTCAC1217410.16247932823210623No Hit
ATCGGGCACGCTTACA1211790.16172926553780897No Hit
CCGGGTATGGTTCTCC1189630.15877172295673647No Hit
GTGGCTGTGACCTTGA1163920.15534038632499575No Hit
TGCTACCTGCCTACGG1163350.15526431235066313No Hit
CACGAATTGAGCGCTC1162050.15509081030393956No Hit
CAAGAATGATACTTTC1138670.15197044272517263No Hit
GTACTGCCTCGTGCAC1106690.14770229237577287No Hit
GCAAACTACCTATCTT1103280.14724718316090568No Hit
TTCAAGTCTGATGGAC1096210.1463035989529552No Hit
TGCCGGAACCTGAGAG1086940.14506639589670328No Hit
TTTAGTCTGACAGGCA1059620.1414201836532511No Hit
TCATTGGGAGTCCCAG995360.1328438440205923No Hit
GCCTAAATGAAAGGTT980080.13080452765602604No Hit
CTACCTCGATGAACAA976230.13029069467149856No Hit
GAAAGTAACGCCCAAC934960.12478267200358963No Hit
AAGACAAACAGCTTGT918790.12262457346857417No Hit
CGGTTCACTTCTGGGC916030.12225621527706876No Hit
TATCGATCTGCCGTTG913300.12189186097894926No Hit
CAAACCTGACTGTACA891040.11892097208659033No Hit
CTCCGTAACAGACAAT848550.11325012442098698No Hit
TCCATTTGAAGGGAGG846770.11301256008008854No Hit
CTGAGCGTGTGTTCCC844610.1127242797563017No Hit
ATGCAAAGATAACGGG832310.11108268346807103No Hit
CAAGATAGACGAATCT815340.10881781444276414No Hit
GCTGTGGTGCAAGTAA775220.10346327435464912No Hit
CCAGCACGACTACTCC770910.10288804833820409No Hit
TCTTTCCACGCTTACA765280.10213665101277815No Hit
ATGGGAGTGCCCGAGT764050.1019724913839551No Hit
AGAGTACCTCAGGGAT756980.10102890717600461No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)