FastQCFastQC Report
Sat 1 Apr 2023
EGAF00006127117

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006127117
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences76839271
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG8518591.1086245209171752No Hit
CTCTCTTTGAGTACGG3096480.4029814390092275No Hit
TGTCTGCACTTATGGC1767050.22996704380498353No Hit
TACCGACCTAACGAAT1733810.22564113082228485No Hit
TGGACCTCTCGACTAT1691770.2201699701185348No Hit
TAACGCATGTGATGAA1641200.21358869997608385No Hit
TGTAGACACGAATTGA1569200.20421849134929976No Hit
CTAATCTACATGAATG1553100.20212320858692168No Hit
CGCTAGTCTAGCCTAT1537170.20005004992824565No Hit
TGTACGATGCAATAGA1449340.18861969682143392No Hit
CGCATTCTGACTAGTC1442840.1877737752092937No Hit
GGTATTTCTTGGCTGC1307780.17019682552688453No Hit
AGAACGCGAGTACGTT1303500.16963981868073685No Hit
AACTTACCTTTGACAC1283360.16701876310096694No Hit
CGTGTAATGTAACGGG1279210.16647867468706204No Hit
CTGCACGGAACACCGC1272710.1656327530749218No Hit
CCGGGTATGGTTCTCC1205050.15682735980147444No Hit
GTGGCTGTGACCTTGA1202300.15646946988864585No Hit
TGCTACCTGCCTACGG1199820.15614671825816775No Hit
CACGAATTGAGCGCTC1186540.15441843533367203No Hit
CAAGAATGATACTTTC1162890.15134058208334641No Hit
GCAAACTACCTATCTT1145600.14909043059505342No Hit
GTACTGCCTCGTGCAC1139050.14823800189358902No Hit
TTCAAGTCTGATGGAC1135150.14773044892630488No Hit
AGTTTCTTGATGTCAC1123620.1462299141281546No Hit
TGCCGGAACCTGAGAG1116820.14534494998006944No Hit
ATCGGGCACGCTTACA1099510.14309219565604678No Hit
TTTAGTCTGACAGGCA1092280.14215127053977386No Hit
TCATTGGGAGTCCCAG1025890.13351115733516003No Hit
GCCTAAATGAAAGGTT1013300.13187267224333765No Hit
CTACCTCGATGAACAA993610.1293101804674852No Hit
GAAAGTAACGCCCAAC980310.1275792947072598No Hit
CGGTTCACTTCTGGGC939970.12232937504053103No Hit
TATCGATCTGCCGTTG925920.1205008829404433No Hit
CAAACCTGACTGTACA912380.11873876315146197No Hit
CTCCGTAACAGACAAT880740.1146210770271363No Hit
CTGAGCGTGTGTTCCC870580.11329883647646787No Hit
TCCATTTGAAGGGAGG861570.11212625898025504No Hit
AAGACAAACAGCTTGT844290.10987740890982685No Hit
CAAGATAGACGAATCT827070.10763636734658764No Hit
GCTGTGGTGCAAGTAA805560.10483701751933593No Hit
TCTTTCCACGCTTACA791680.10303064952295032No Hit
CCAGCACGACTACTCC782650.10185546919100781No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)