FastQCFastQC Report
Sat 1 Apr 2023
EGAF00006127135

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006127135
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72059345
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG7672831.064793192333347No Hit
TAGCTCGCTCCTGAGC2470970.34290764091735776No Hit
GCGCAGTTGACGCGAA2190590.30399804494476046No Hit
GGTATACTGCGAGTGA2070120.28727988021539747No Hit
CCTACGGGAAGACAAT2062550.28622935720550885No Hit
CGCCCTTCTTATGACC1911810.2653104881816508No Hit
CTCCAACTGAAATCGA1772420.24596670980009602No Hit
CACATTACTGAGCCTC1634810.22686995003909624No Hit
TTCCCTGGATGATGAA1587000.22023514091059254No Hit
GCCATTCACTAACGGG1391840.19315190833333273No Hit
CCCACAGGATAGCGAG1389330.19280358432344896No Hit
ACAGTCATGATCCTCC1363080.18916075354279172No Hit
GGGTGAAACACCAAGG1355560.1881171692581996No Hit
GAGGTGCCTCACAGTT1346970.18692509625226264No Hit
CAAGGGAACATGTCCA1341920.18622428499731714No Hit
CAACACCCTGGAATGC1300870.18052759152889886No Hit
TATTGGTCTATGTCAC1277750.17731912495180188No Hit
GTCCTGACTCTGGCAC1272220.17655170193401007No Hit
CTCAAACGAGCGAGTA1261240.17502795785890088No Hit
ACCTGCTACTTAGCTG1235930.17151557511381765No Hit
GGGATCAGAGCGTATT1223370.16977256731933935No Hit
ACAATGCACAAGCTAA1215470.16867624872249393No Hit
GTAAGAAACCGGCACT1207530.16757437914541135No Hit
GGAGTTACTGGACTGA1200050.16653634584105642No Hit
TCAGTCCTGCGACAAG1196750.16607838997148808No Hit
TAACGTTCTCTGTACA1188660.164955704218516No Hit
ACACATCGATTCCATT1185970.16458240079756487No Hit
CCTATCCGACGATTGT1177250.163372287105857No Hit
ATGGGACGAGAAACAT1135890.15763257354060045No Hit
GTGAGATCTTCGCTAA1130230.15684710983703778No Hit
TCGACTCTGTCAGGTT1119840.15540524272042716No Hit
CGGTTGGACCGAAAGC1101750.15289481190815707No Hit
TCTATGGGAAGACAAT1085210.15059948158007821No Hit
ACGTCCACTCCGATTA1054270.1463057983666102No Hit
CCTGCTATGTGTGCTA1054180.1462933086610765No Hit
GAACTAGCTCATCCTC1037410.14396606019663377No Hit
CCGACTACTTTCTGGA1023750.14207040044563268No Hit
GTGAAGCGAGTCTTGA1017370.14118501909780057No Hit
TGCCTACTGGGGATTG1014890.14084085832309468No Hit
GTACCCTTGGGATGGT1011540.14037596372822983No Hit
GTCGCATCTGGATGGT999670.1387287103428431No Hit
CTTTCTGCTCGGGTAA997500.13842756966497546No Hit
GCCATAATGTGGTGAG969550.13454882222423753No Hit
CGTTACCTGGACAAAT968410.13439061928747756No Hit
ACACACTGATCCCGTT955490.13259765267086454No Hit
ATTTCTGACAGCGCTC955370.13258099973015297No Hit
GGTCTAAACATCGGTT952550.13218965562343094No Hit
TTTCGCTCTATCCTCC948560.13163594534477105No Hit
GTCCGAGTGTGGTGAG941940.13071725811551577No Hit
TGCGCAGACCAACGCC937400.13008722185859448No Hit
GTCGAATACCCTATCC935930.12988322333487767No Hit
AAACCCTGACAAGTAA922920.12807776701273096No Hit
CTGTAACGAAGCAGGT922340.12799727779929168No Hit
TCCATTCCTCCGATTA915060.12698699939612274No Hit
CTAACAGTGATCACAC906010.12573109011745803No Hit
CTGCCATTGGAAGGTC904650.12554235678939352No Hit
ACCCTTTCTGAGCCTC900650.1249872587656743No Hit
GTTGCTAGACAAGTTC899800.12486930043563399No Hit
CAGTATTCTATTGCCA886420.12301249754629326No Hit
AGCGCCTGATTTCTGT885080.12282653970834734No Hit
CGCAATCCTGGTTTGT877020.12170801719055314No Hit
GAAGTATGACATCTTT868540.12053120938026844No Hit
TGGTCAAACTGAGTAA866180.1202037015462741No Hit
GGTAGTTTGTAAAGCA863680.11985676528144962No Hit
GCAACTTGACCCGCAA858390.11912264814508096No Hit
TTTAGGGACCCGGACT852140.11825530748301973No Hit
CTAACAGTGGCTGAGA851960.11823032807195236No Hit
GTTGACTGAATTGCCA843110.11700217369447363No Hit
CGATCGGTGTTGCGTA834880.11586005951067138No Hit
GATACGGGAAACGTTC831750.1154256953071111No Hit
TAGGACTTGGCCCTAG829200.1150718203169901No Hit
TTCGATGGAAACGTAA826160.11464994581896351No Hit
CTGCCTTGAATAACCC820480.11386170662528226No Hit
CACCGTTACACGCCAC818880.11363966741579458No Hit
CTCTTTCTGCTCATCC812150.11270571499088704No Hit
GTGTACTGAAAGTCTC801020.11116115473988836No Hit
TGGATAGCTCGTGCAC793400.11010369300470328No Hit
AGGTATAGAGTTAGGG791460.10983447046319947No Hit
CATAGCATGCTGCGGT791040.10977618517070895No Hit
TCTGAACGAGTTAGTC790510.10970263468256616No Hit
GCTAAGACTGATAGCG790490.10969985919244757No Hit
GCTAGATACCAATAGA790260.1096679410560837No Hit
TAGGACTTGGCACTTA788580.10943479988612165No Hit
TAATTGCCTTACGTTG787070.10922525038216764No Hit
CAATGTGACCAAGTAA775360.10760020091772969No Hit
GGTGAGATGTCGTACA775040.10755579307583216No Hit
CTAATCACTCAGGGTA770870.10697710338610489No Hit
TTAGCGATGTACGATC765910.10628878183669309No Hit
CGATGATTGGCGGTTC765410.10621939458372817No Hit
CAAGGGTGACGATCGC762440.10580723430111667No Hit
CTGTCGTTGTGCTCAA753170.10452079463114743No Hit
TTGCGATGAGGTATGG750480.10414749121019627No Hit
GAAGTTCTGGAAGGCT746130.10354382210940165No Hit
GGCTTCTACATTGGTC739900.10267925693745897No Hit
CATCAGTGAGGCAGTA728600.10111110502045224No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)