EGAF00006127173 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00006127173
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	31640386
Sequences flagged as poor quality	0
Sequence length	46
%GC	31

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2217785	7.009348748147383	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	298841	0.9444922701006239	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	191140	0.6041013532515058	No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	180132	0.5693103744056726	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	146646	0.46347727869059496	No Hit
ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	41931	0.1325236676948252	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	41674	0.1317114146458264	No Hit
TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	33409	0.10558973585214795	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACGCT	1380	0.0	16.807692	1
GACGCTC	1815	0.0	11.897237	2
ACGCTCT	2385	0.0	11.485804	1
TCTTCCG	8680	0.0	11.356021	2
CGCTCTT	3790	0.0	10.815432	1
CTTCCGA	9060	0.0	10.284442	3
TCGACGG	255	1.7259135E-6	10.193712	1
TTCCGAT	9870	0.0	9.461258	4
TCCGATC	9920	0.0	9.313489	5
CTCTTCC	11450	0.0	9.098325	1
CGTAATC	985	0.0	8.728938	1
ACGTGCG	1820	0.0	8.572217	14
TGCGCGA	1880	0.0	8.405375	17
CCGATCT	10915	0.0	8.373284	6
CGAGTCG	1895	0.0	8.338471	21
CGCGACT	300	1.2818207E-4	7.998143	1
CGCGAGT	1970	0.0	7.818213	19
CTTCGCG	3110	0.0	7.653462	13
CGTTCGT	875	0.0	7.541107	1
TTCGCGG	3185	0.0	7.410415	14