FastQCFastQC Report
Wed 27 Apr 2022
EGAF00006127181

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006127181
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47793961
Sequences flagged as poor quality0
Sequence length46
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5286471.1060958098869436No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3409460.713366276546947No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1950530.4081122299112225No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)