FastQCFastQC Report
Wed 11 May 2022
EGAF00006127186

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006127186
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47055479
Sequences flagged as poor quality0
Sequence length31
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1111660.2362445401947773No Hit
CCTCTGCAAAAAAAAAAAAAAAAAAAAAAAA842440.17903122397287677No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA670520.14249562734235474No Hit
CATCATCTTACAAAAAAAAAAAAAAAAAAAA600500.12761531978029592No Hit
TCCGAATTCAAAAAAAAAAAAAAAAAAAAAA548400.11654328287679315No Hit
CCTCTGCAATAAAAAAAAAAAAAAAAAAAAA547030.1162521371847049No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)