EGAF00006127187 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00006127187
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	47055479
Sequences flagged as poor quality	0
Sequence length	46
%GC	32

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3108465	6.605957618665406	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	360460	0.7660319428477181	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	286661	0.6091979214577754	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	216678	0.46047347642556136	No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	196580	0.41776219088110866	No Hit
ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	66414	0.14113978098065902	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	56908	0.12093809522160003	No Hit
TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	55101	0.11709794729748686	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACGCT	2460	0.0	18.93247	1
GACGCTC	3040	0.0	14.069246	2
TCTTCCG	10555	0.0	10.565903	2
ACGCTCT	3985	0.0	10.482887	3
ACGACGC	1445	0.0	10.236474	1
CGTAATC	1735	0.0	10.138406	1
CTTCCGA	11750	0.0	9.287904	3
TTCCGAT	12400	0.0	8.785788	4
CGCTCTT	5590	0.0	8.581949	1
TCCGATC	12465	0.0	8.4040785	5
CACGACG	1015	0.0	8.270159	2
TGCGCGA	3385	0.0	7.9775095	15
CGTTTCG	585	2.4920155E-10	7.85884	1
TCGACGA	360	1.5845939E-5	7.773418	1
ACGTGCG	3615	0.0	7.4689407	12
CCGATCT	13645	0.0	7.4140553	6
CGCGAGT	3665	0.0	7.368456	17
CGAGTCG	3640	0.0	7.3641543	19
GCGCGAG	3890	0.0	7.199189	16
CTCTTCC	16565	0.0	7.131527	1