FastQCFastQC Report
Thu 6 Oct 2022
EGAF00006127212

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006127212
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences103133051
Sequences flagged as poor quality0
Sequence length35-151
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCCTAAACATTAACCATCCGTAGTTATTTTTGAGACATGGATTAAAAC3759690.36454753966310954No Hit
GATCAGGGAGCTAAATGACTTGCCAAAAGTCACCCAGTTATTGAGGTCTG3625430.35152940447771686No Hit
GATCTTTCCACTGCACTGTGCCGCCTCGGTGAACAGATGCGGGGAATTTA3040270.29479104617975477No Hit
GATCTGAACAGGTGGCAAAGGCTTAACAGGCTAGCGGTCACTGTAGTGAC3002590.291137513230361No Hit
GATCATCAAATTTAACTTTCTAAATCCTAAGGAGGAAACCGAGACTCCAG1809260.17542969808970357No Hit
GATCTGGGAAAGCTATATAACTGCGAAAGCCTTGTCACATCTACAAATTC1805870.17510099647881067No Hit
GATCCTTTCTTTCCATGGTTTGGCTTCTACTCCAAAGCCACTTATTTGTG1661530.16110548305217887No Hit
GATCGATTTGGGATTTTAAATGGAAATGCACTAAAAATTCCTTAATTCCA1610680.15617495888878533No Hit
GATCTTCCAATCCTTTCCTCCACAAAGATAGAAGTTAATTTTGCTGCATC1572230.15244676510151922No Hit
GATCTTCTAAAAGGCCGTGACATCACGGCCCAGGTGACCGCGGCCCAGCC1566820.15192219999387005No Hit
GATCTCTGTTCCCTATGGGAGCAGTGAATCACCTGAACTTTGGGTCAATG1553180.15059963658012987No Hit
GATCCCGAGACTCTCGGCTTGCGCAGGCGCTCTTTGGTGTTTACAGCGGC1401980.13593896296154373No Hit
GATCACTCCCTCCGTCTTTTCGCCGCTGTGGGGCCCCAGCCCGAGAGGAG1397030.1354590004323638No Hit
GATCTTCAAGGGGTGAAGGGCATCTCGACTGGGGCCACCCCCAAGCTCGC1379130.13372337835714762No Hit
GATCTGGGACTTGGTTGGGGCCTCGGCCGGTCCAGCTGTCTGGCTGCGCA1195800.11594731159461188No Hit
GATCCCCCAGAGCAGCCTGAGGCTTCCCACAGGCAGCCAGGCAGCCTCCG1103730.10702000855186569No Hit
GATCAAAGGGGATAATGTGTGAGGAAGCATGTTAAAAGCTGAAAGTTTTG1087480.1054443739863761No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)