FastQCFastQC Report
Thu 2 May 2024
EGAF00006127457

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006127457
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44941484
Total Bases4.9 Gbp
Sequences flagged as poor quality0
Sequence length111
%GC62

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1082240.24081091759230738No Hit
CGGGGGACCACCAGGTTGCCTAAGGAGGGGTGAACCGGCCCAGGTCGGAA666990.14841298965561528No Hit
GGGGACCACCAGGTTGCCTAAGGAGGGGTGAACCGGCCCAGGTCGGAAAC502800.11187881557271229No Hit
CTTGAGCCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCC461680.10272913996342443No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)