FastQCFastQC Report
Wed 8 May 2024
EGAF00006128361

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006128361
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences319883
Total Bases46.6 Mbp
Sequences flagged as poor quality0
Sequence length35-151
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCATCTTCTGCCTCTCCATTTCGTTGCTTTCTATACTTCAGCCCCTCTA12500.3907678745041156No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN8640.27009875485724466No Hit
CCAGGTACATCAGATCCATCAGGTCTGAGCTGTGTTGACTACCACTACTT4820.15068009240878696No Hit
CTGGGGAGGAAACACAGGTCAGCATGGGAACAGGGGTCACAGTGGACACA4180.13067277723417625No Hit
TGGATACTCACGACGCGGACCCAGTTCTCACTCCCATTGGGTGTCGGGTT4000.125045719841317No Hit
GGCAGACAGTGTGACAAAGAGGCTTGGTGTAGGAGAAGAGGGATCAGGAC3850.12035650534726759No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)