FastQCFastQC Report
Wed 8 May 2024
EGAF00006128373

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006128373
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences229534
Total Bases31.4 Mbp
Sequences flagged as poor quality0
Sequence length35-151
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN18330.7985745031237202No Hit
CCAGGTACATCAGATCCATCAGGTCTGAGCTGTGTTGACTACCACTACTT3180.13854156682670107No Hit
CTCATCTTCTGCCTCTCCATTTCCTTGCTTTCTATACCTCAGCCCTTCTA2840.12372894647416069No Hit
GGCAGACAGTGTGACAAAGAGGCTGGTGTAGGAGAAGAGGGATCAGGACG2600.11327297916648514No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)