FastQCFastQC Report
Wed 8 May 2024
EGAF00006128387

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006128387
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences333696
Total Bases48.8 Mbp
Sequences flagged as poor quality0
Sequence length35-151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCATCTTCTGCCTCTCCATTTCCTTGCTTTCTATACCTCAGCCCTTCTA12040.360807441503644No Hit
CTCATCTTCTGCCTCTCCATTTCCTTACTTTCTATACATCAGCCCCTCTA9580.28708764863828157No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN7770.23284666283084005No Hit
TGTCAAGTGGGAAATGAATGCTCTTACAAGGCTCAAACTTGTGAACACAT5110.15313339087073263No Hit
GGCAGACAGTGTGACAAAGAGGCTGGTGTAGGAGAAGAGGGATCAGGACG5010.15013665132336018No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)