FastQCFastQC Report
Sat 6 Aug 2022
EGAF00006128401

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006128401
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences352874
Sequences flagged as poor quality0
Sequence length35-151
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN26660.7555104654919319No Hit
GGCAGACAGTGTGACAAAGAGGCTGGTGTAGGAGAAGAGGGATCAGGACG5700.16153074468507173No Hit
GCAGGTGCCTTTGCAGAAACAAAGTCAGGGTTCTTCAAGTCACAAAGGGA4300.12185652669224709No Hit
TGGATACTCACGACGCGGACCCAGTTCTCACTCCCATTGGGTGTCGGGTT4080.11562200672194609No Hit
CCAGGTACATCAGATCCATCAGGTCTGAGCTGTGTTGACTACCACTACTT3830.10853732493751311No Hit
CTGGGGAGGAAACACAGGTCAGCATGGGAACAGGGGTCACGGTGGACACG3630.10286957950996674No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)