FastQCFastQC Report
Wed 8 May 2024
EGAF00006128405

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006128405
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences314366
Total Bases45.4 Mbp
Sequences flagged as poor quality0
Sequence length35-151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN9920.31555575348479165No Hit
CTCATCTTCTGCCTCTCCATTTCCTTGCTTTCTATACCTCAGCCCTTCTA7750.24652793240999343No Hit
CTCATCTTCTGCCTCTCCATTTCCTTACTTTCTATACATCAGCCCCTCTA5600.17813631245109204No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)