FastQCFastQC Report
Wed 8 May 2024
EGAF00006128457

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006128457
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences279043
Total Bases38.6 Mbp
Sequences flagged as poor quality0
Sequence length35-151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN17370.6224847066581136No Hit
CTCATCTTCTGCCTCTCCATTTCCTTGCTTTCTATACCTCAGCCCTTCTA3030.1085854151510699No Hit
GGCAGACAGTGTGACAAAGAGGCTGGTGTAGGAGAAGAGGGATCAGGACG2810.10070132560214733No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)