FastQCFastQC Report
Wed 8 May 2024
EGAF00006128469

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006128469
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences313353
Total Bases46 Mbp
Sequences flagged as poor quality0
Sequence length35-151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCATCTTCTGCCTCTCCATTTCCTTGCTTTCTATACCTCAGCCCTTCTA11800.37657210877189623No Hit
CTCATCTTCTGCCTCTCCATTTCCTTACTTTCTATACATCAGCCCCTCTA8240.2629622183288496No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN6600.21062507778767076No Hit
GGCAGACAGTGTGACAAAGAGGCTGGTGTAGGAGAAGAGGGATCAGGACG4940.15764967943501418No Hit
TGTCAAGTGGGAAATGAATGCTCTTACAAGGCTCAAACTTGTGAACACAT4110.1311619802586859No Hit
CCAGGTACATCAGATCCATCAGGTCCAAGCTGTGTTGACTACCACTACTT3150.10052560530775195No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)