FastQCFastQC Report
Wed 8 May 2024
EGAF00006128471

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006128471
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences357281
Total Bases52.4 Mbp
Sequences flagged as poor quality0
Sequence length35-151
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCATCTTCTGCCTCTCCATTTCGTTGCTTTCTATACTTCAGCCCCTCTA17850.49960675210828454No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN7260.2032014016978233No Hit
CCAGGTACATCAGATCCATCAGGTCTGAGCTGTGTTGACTACCACTACTT5960.16681547577397063No Hit
GGCAGACAGTGTGACAAAGAGGCTGGTGTAGGAGAAGAGGGATCAGGACG4870.13630727634550954No Hit
TGGATACTCACGACGCGGACCCAGTTCTCACTCCCATTGGGTGTCGGGTT4270.11951377207296218No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)