FastQCFastQC Report
Wed 8 May 2024
EGAF00006128475

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006128475
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences252003
Total Bases36.1 Mbp
Sequences flagged as poor quality0
Sequence length35-151
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCATCTTCTGCCTCTCCATTTCGTTGCTTTCTATACTTCAGCCCCTCTA12680.5031686130720666No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN8920.35396404011063365No Hit
TGGATACTCACGACGCGGACCCAGTTCTCACTCCCATTGGGTGTCGGGTT4060.16110919314452607No Hit
AGACATGCACACACCAGAGAAGATTCCAATTGAGTGTCCTCCCTTTATTC3460.13729995277833995No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)