FastQCFastQC Report
Wed 8 May 2024
EGAF00006128481

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006128481
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences346860
Total Bases51.4 Mbp
Sequences flagged as poor quality0
Sequence length35-151
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCATCTTCTGCCTCTCCATTTCCTTACTTTCTATACATCAGCCCCTCTA19040.5489246381825521No Hit
TGTCAAGTGGGAAATGAATGCTCTTACAAGGCTCAAACTTGTGAACACAT7060.20354033327567317No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN5970.17211555094274347No Hit
TGGATACTCACGACGCGGACCCAGTTCTCACTCCCATTGGGTGTCGGGTT3820.11013088854292799No Hit
GGCAGACAGTGTGACAAAGAGGCTGGTGTAGGAGAAGAGGGATCAGGACG3790.10926598627688405No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)